Search results for "Chemical bond"

showing 10 items of 123 documents

Halogen bonds in 2,5-dihalopyridine-copper(II) chloride complexes

2018

Ten coordination complexes obtained through a facile reaction between 2,5-dihalopyridines and copper(II) chloride (CuCl2) are characterized using single crystal X-ray diffraction. Two series of dihalopyridine complexes based on 2-chloro-5-X-pyridine and 2-bromo-5-X-pyridine (X = F, Cl, Br and I) were prepared to analyze the C–X2/X5⋯Cl–Cu halogen bonds (XB). The influence of X2- and X5-substituents on the respective interactions was examined by comparing them to the X2/X3⋯Cl–Cu XBs found in mono-substituted halopyridine complexes, (n-X-pyridine)2·CuCl2 (n = 2, 3 and X = Cl, Br and I). Varying the X5-halogens in (2,5-dihalopyridine)2·CuCl2, the C5–X5⋯Cl–Cu XBs follow the order F5 1 and they c…

010405 organic chemistryChemistrySubstituentchemistry.chemical_elementGeneral Chemistrykompleksiyhdisteet010402 general chemistryCondensed Matter Physics01 natural sciencesChlorideCopperchemical bonds0104 chemical scienceschemistry.chemical_compoundCrystallographykemialliset sidoksetHalogenmedicineCopper(II) chlorideGeneral Materials Sciencecoordination complexesPolarization (electrochemistry)Single crystalta116medicine.drugCrystEngComm
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Tuning the Electronic Properties of the Dative N-B Bond with Associated O-B Interaction: Electron Localizability Indicator from X-Ray Wavefunction Re…

2016

Despite the immense growth in interest in difluoroborate dyes, the nature of the interactions of the boron atom within the N-BF2 -O kernel is not yet fully understood. Herein, a set of real-space bonding indicators is used to quantify the electronic characteristics of the dative N-B bond in difluoroborate derivatives. The atoms-in-molecules (AIM) partitioning scheme is complemented by the electron localizability indicator (ELI-D) approach, and both were applied to experimental and theoretical electron-density distributions (X-ray constrained wavefunction fitting vs. DFT calculations). Additionally, Fermi orbital analysis was introduced for small DFT models to support and extend the findings…

010405 organic chemistryChemistryX-raychemistry.chemical_elementElectron010402 general chemistry01 natural sciencesQuantum chemistryAtomic and Molecular Physics and Optics0104 chemical sciencesChemical bondChemical physicsKernel (statistics)Physical and Theoretical ChemistryAtomic physicsWave functionBoronFermi Gamma-ray Space TelescopeChemphyschem : a European journal of chemical physics and physical chemistry
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Carbon monoxide activation by a molecular aluminium imide: C-O bond cleavage and C-C bond formation

2020

Anionic molecular imide complexes of aluminium are accessible via a rational synthetic approach involving the reactions of organo azides with a potassium aluminyl reagent. In the case of K2 [(NON)Al(NDipp)]2 (NON=4,5-bis(2,6-diisopropylanilido)-2,7-di-tert-butyl-9,9-dimethyl-xanthene; Dipp=2,6-diisopropylphenyl) structural characterization by X-ray crystallography reveals a short Al-N distance, which is thought primarily to be due to the low coordinate nature of the nitrogen centre. The Al-N unit is highly polar, and capable of the activation of relatively inert chemical bonds, such as those found in dihydrogen and carbon monoxide. In the case of CO, uptake of two molecules of the substrate…

010405 organic chemistrySubstrate (chemistry)General Chemistry010402 general chemistry01 natural sciencesIsocyanateCatalysis3. Good health0104 chemical scienceschemistry.chemical_compoundchemistryChemical bondReagentPolymer chemistryMoleculeImideBond cleavageCarbon monoxide
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In silico discovery of substituted pyrido[2,3-d]pyrimidines and pentamidine-like compounds with biological activity in myotonic dystrophy models

2016

Myotonic dystrophy type 1 (DM1) is a rare multisystemic disorder associated with an expansion of CUG repeats in mutant DMPK (dystrophia myotonica protein kinase) transcripts; the main effect of these expansions is the induction of pre-mRNA splicing defects by sequestering muscleblind-like family proteins (e.g. MBNL1). Disruption of the CUG repeats and the MBNL1 protein complex has been established as the best therapeutic approach for DM1, hence two main strategies have been proposed: targeted degradation of mutant DMPK transcripts and the development of CUG-binding molecules that prevent MBNL1 sequestration. Herein, suitable CUG-binding small molecules were selected using in silico approach…

0301 basic medicineMolecular biologyPhysiologyMutantMyotonic dystrophyDruggabilitylcsh:Medicine01 natural sciencesBiochemistryPhysical ChemistryMyoblastschemistry.chemical_compoundAnabolic AgentsMedicaments--InteraccióAnimal CellsDrug DiscoveryMedicine and Health SciencesMBNL1Drosophila ProteinsMyotonic Dystrophylcsh:ScienceRNA structureConnective Tissue CellsMultidisciplinaryMolecular StructureOrganic CompoundsStem CellsPhysicsRNA-Binding ProteinsBiological activityPhenotypeClimbingMolecular Docking SimulationNucleic acidsChemistryDrosophila melanogasterBiochemistryGenetic DiseasesConnective TissueRNA splicingPhysical SciencesCellular TypesAnatomyLocomotion57 - BiologiaSignal TransductionResearch ArticleBiotechnologyHydrogen bondingcongenital hereditary and neonatal diseases and abnormalitiesIn silicoPrimary Cell CultureComputational biologyBiology010402 general chemistryMyotonic dystrophyMyotonin-Protein KinaseDrug interactionsSmall Molecule Libraries03 medical and health sciencesStructure-Activity RelationshipmedicineAnimalsHumansRNA MessengerEnllaços d'hidrogenClinical GeneticsChemical PhysicsBiology and life sciencesChemical BondingBiological Locomotionlcsh:ROrganic ChemistryEstructura molecularChemical CompoundsHydrogen BondingCell BiologyFibroblastsmedicine.disease0104 chemical sciencesBenzamidinesAlternative SplicingDisease Models AnimalMacromolecular structure analysis030104 developmental biologyPyrimidinesBiological TissuechemistrySmall MoleculesRNAlcsh:QTrinucleotide Repeat ExpansionMolecular structure
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Insights into the inhibited form of the redox-sensitive SufE-like sulfur acceptor CsdE

2017

17 p.-8 fig.

0301 basic medicineProtein ConformationDimerlcsh:MedicineMolecular DynamicsCrystallography X-RayPhysical ChemistryBiochemistryDEAD-box RNA HelicasesMolecular dynamicschemistry.chemical_compoundComputational ChemistryNucleophileBiochemical Simulationslcsh:ScienceMultidisciplinaryCrystallographyChemistryOrganic CompoundsPhysicsEscherichia coli ProteinsCondensed Matter Physics3. Good healthPhysical sciencesChemistryCarbon-Sulfur LyasesBiochemistryCrystal StructureResearch ArticleChemical ElementsProtein subunitChemical physicschemistry.chemical_elementOxidative phosphorylationMolecular Dynamics Simulation03 medical and health sciencesThiolsEscherichia coliSolid State PhysicsProtein Interaction Domains and MotifsChemical BondingOrganic Chemistrylcsh:RChemical CompoundsBiology and Life SciencesComputational BiologyDimers (Chemical physics)Hydrogen BondingCell BiologySulfurAcceptorRedox sensitiveOxidative Stress030104 developmental biologyBiophysicslcsh:QProtein MultimerizationSulfur
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Negative thermal expansion in cuprite-type compounds: A combined synchrotron XRPD, EXAFS, and computational study of Cu2O and Ag2O

2006

Cuprite-type oxides (Cu2O and Ag2O) are framework structures composed by two interpenetrated networks of metal-sharing M4O tetrahedra (M = Cu, Ag). Both compounds exhibit a peculiar negative thermal expansion (NTE) behaviour over an extended temperature range (9 240 K for Cu2O, 30-470 K for Ag2O). High-accuracy synchrotron powder diffraction and EXAFS measurements were performed from 10 K up to the decomposition temperature to understand the nature of the NTE effects. The critical comparison of the diffraction and absorption results concerning the temperature dependence of the interatomic distances and of the atomic vibrational parameters proves to be fundamental in defining the local dynam…

ABSORPTION FINE-STRUCTUREPOWDER DIFFRACTIONExtended X-ray absorption fine structureChemistryThermal decompositionCupriteCharge densityGeneral ChemistryAtmospheric temperature rangeCondensed Matter PhysicsThermal expansionCrystallographyChemical bondNegative thermal expansionPhysics::Atomic and Molecular ClustersSCATTERINGRADIATIONGeneral Materials ScienceThermal expansionTEMPERATUREPowder diffractionJournal of Physics and Chemistry of Solids
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Modeling of defects and surfaces in perovskite ferroelectrics

2002

The results of electronic structure calculations for different terminations of SrTiO3 (100) and (110) perovskite thin films are discussed. These calculations are based on the ab initio Hartree-Fock (HF) method and Density Functional Theory (DFT). Results are compared with previous ab initio plane-wave LDA and classical Shell Model (SM) calculations. Calculated considerable increase of the Ti – O chemical bond covalency nearby the surface is confirmed by experimental data. Our quantum chemical calculations performed by means of the intermediate neglect of differential overlap (INDO) method confirm the existence of self-trapped electrons in KNbO3, KTaO3 and BaTiO3 crystals. The relevant latti…

Ab initioElectronic structureElectronCondensed Matter PhysicsMolecular physicsInorganic ChemistryCondensed Matter::Materials Sciencechemistry.chemical_compoundchemistryChemical bondComputer Science::Systems and ControlComputational chemistryMaterials ChemistryStrontium titanateDensity functional theoryLuminescencePerovskite (structure)Journal of Crystal Growth
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An increased F2-laser damage in ‘wet’ silica glass due to atomic hydrogen: A new hydrogen-related E′-center

2006

Abstract A dramatic increase of F2-laser induced room temperature-stable point defects in ‘wet’ synthetic silica glass occurs when irradiation temperature is lowered to 80 K. Contrary to the predictions based on the established models of defect processes, a large part of defects induced at 80 K remains stable also at the room temperature. The intensities of the laser-induced optical absorption bands of the non-bridging oxygen hole centers (2.0 and 4.8 eV) and E′-centers (5.8 eV) are comparable to those created by neutron irradiation (1018 n/cm2). A growth of infrared absorption peak at 2237 cm−1 indicates creation of silicon hydride (SiH) groups. A study of irradiation dose dependences and …

Absorption spectroscopyHydrogenSiliconHydrideDangling bondAnalytical chemistrychemistry.chemical_elementCondensed Matter PhysicsElectronic Optical and Magnetic MaterialsChemical bondchemistryExcited stateMaterials ChemistryCeramics and CompositesIrradiationJournal of Non-Crystalline Solids
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Short-range order and luminescence in amorphous silicon oxynitride

2000

Abstract Using Si 2p core-level X-ray photoelectron spectroscopy, we found that the short-range order in amorphous silicon oxynitride (a-SiOxNy) can be quantitatively described by a random bonding model. Results also show that the second and even further neighbours of the Si in the network affect the chemical shifts of the X-ray photoelectron spectra. Cathodoluminescence and photoluminescence of a-SiOxNy with different compositions are also measured. A red band with energies of 1.8–1.9 eV, a blue band with an energy of 2.7 eV and ultraviolet bands with energies of 13.1, 3.4–3.6, 4.4–4.7 and 5.4eV were observed. The 1.8–1.9 eV band is attributed to the O and N atoms with an unpaired electron…

Amorphous siliconchemistry.chemical_compoundPhotoluminescenceUnpaired electronchemistryChemical bondX-ray photoelectron spectroscopyGeneral Chemical EngineeringBinding energyAnalytical chemistryGeneral Physics and AstronomyCathodoluminescenceLuminescencePhilosophical Magazine B
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Experimental and Theoretical Studies of Nonclassical d 0 Cyclopentadienyl Polyhydride Complexes of Molybdenum and Tungsten

1998

Low-temperature protonation of compounds Cp{sup *}MH{sub 5}(PMe{sub 3}) (M = Mo, 1; W, 2) by HBF{sub 4}{center_dot}Et{sub 2}O in CD{sub 2}Cl{sub 2} or CDFCl{sub 2} affords the thermally unstable hexahydride derivatives [Cp{sup *}MH{sub 6}(PMe{sub 3})]{sup +} (M = Mo, 3; W, 4). The corresponding protonation of 1- and 2-d{sup 5} affords 3- and 4-d{sup 5}, respectively. The {Delta}{delta} on going from H{sub 6} to HD{sub 5} is small for both compounds, but positive for 3 and negative for 4, and no isotopic perturbation of resonance (IPR) is observed. The T{sub 1min} at 400 MHz for [Cp{sup *}MH{sub 6}(PMe{sub 3})]{sup +} apparently doubles on going from Mo to W (52 ms for 3 and approximately 10…

AnionsReaction mechanismschemistry.chemical_elementProtonation010402 general chemistryLigands01 natural sciencesInorganic ChemistryCyclopentadienyl complexChemical structureMathematical methodsComputational chemistryMolecule[CHIM.COOR]Chemical Sciences/Coordination chemistryPhysical and Theoretical Chemistry010405 organic chemistryHydrideOrganic Chemistry3. Good health0104 chemical sciencesCrystallographychemistryChemical bondMolybdenumPotential energy surfaceDihydrogen complex
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